Difference between revisions of "Samples with Strong X-Ray Absorption"
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== Background == | |||
Considerations for strongly absorbing samples are discussed below. | Considerations for strongly absorbing samples are discussed below. | ||
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The total absorption of any sample can be calculated before a measurement. It is a function of the sample composition, packed sample density, capillary radius, and the x-ray wavelength. One first determines the absorption for the composition and x-ray wavelength (μ), then calculates the total absorption (μ*r) for the actual sample to be measured using the capillary radius (r), sample density and packing fraction. | The total absorption of any sample can be calculated before a measurement. It is a function of the sample composition, packed sample density, capillary radius, and the x-ray wavelength. One first determines the absorption for the composition and x-ray wavelength (μ), then calculates the total absorption (μ*r) for the actual sample to be measured using the capillary radius (r), sample density and packing fraction. | ||
==Guidelines for 11-BM Mail-In Samples== | |||
For its mail-in program, 11-BM uses a wavelength of ~ 0.41 Å (30 keV), and the standard supplied capillary tubes have a radius of 0.04 cm (~0.8 mm diameter). | For its mail-in program, 11-BM uses a wavelength of ~ 0.41 Å (30 keV), and the standard supplied capillary tubes have a radius of 0.04 cm (~0.8 mm diameter). | ||
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http://11bm.xor.aps.anl.gov/absorb/absorb.php | http://11bm.xor.aps.anl.gov/absorb/absorb.php | ||
=== Range of μ*r values === | |||
The experimental implications for a range of sample absorption values (μ*r) are given below: | The experimental implications for a range of sample absorption values (μ*r) are given below: | ||
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* μ*r > 2.5 : Absorption is too large - consider an alternative sample preparation (see below) | * μ*r > 2.5 : Absorption is too large - consider an alternative sample preparation (see below) | ||
== Preparation methods to lower absorption == | |||
To decrease the μ*r of a highly absorbing sample, one must lower its effective packed density or reduce its radius. | To decrease the μ*r of a highly absorbing sample, one must lower its effective packed density or reduce its radius. | ||
===Dilution=== | |||
One trick is dilute your sample by mixing with a lower density and amorphous material (no extra Bragg peaks!) to lower the overall absorption. Good candidates for this dilution method include silica (SiO2 glass) powder (you can grind it by hand using a mortar and pestle) or amorphous boron. | One trick is dilute your sample by mixing with a lower density and amorphous material (no extra Bragg peaks!) to lower the overall absorption. Good candidates for this dilution method include silica (SiO2 glass) powder (you can grind it by hand using a mortar and pestle) or amorphous boron. | ||
===Nested Capillary=== | |||
An absorbing powder sample could also be loaded into a [https://wiki-ext.aps.anl.gov/ug11bm/index.php/Supplies_and_Tools smaller diameter capillary], which is then inserted into the standard 11-BM Kapton tube. | An absorbing powder sample could also be loaded into a [https://wiki-ext.aps.anl.gov/ug11bm/index.php/Supplies_and_Tools smaller diameter capillary], which is then inserted into the standard 11-BM Kapton tube. | ||
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Read our [https://wiki-ext.aps.anl.gov/ug11bm/index.php/Nesting_Glass/Quartz_Capillaries_in_Kapton_Tubes guidelines on nesting capillaries] | Read our [https://wiki-ext.aps.anl.gov/ug11bm/index.php/Nesting_Glass/Quartz_Capillaries_in_Kapton_Tubes guidelines on nesting capillaries] | ||
===Coated Capillary=== | |||
In extreme cases for samples with very high absorption one might consider coating the *inside* of the Kapton capillary with a layer of sample powder mixed with a silicone grease. Or coating the outside of a smaller diameter nested capillary. The sample powder must be *inside* the supplied Kapton tube for mail-in samples. | In extreme cases for samples with very high absorption one might consider coating the *inside* of the Kapton capillary with a layer of sample powder mixed with a silicone grease. Or coating the outside of a smaller diameter nested capillary. The sample powder must be *inside* the supplied Kapton tube for mail-in samples. | ||
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If in doubt, check the grease on your lab XRD machine first. | If in doubt, check the grease on your lab XRD machine first. | ||
===More Information=== | |||
* Wiki page on [https://wiki-ext.aps.anl.gov/ug11bm/index.php/X-ray_Absorption_and_Fluorescence X-ray_Absorption and Fluorescence] | * Wiki page on [https://wiki-ext.aps.anl.gov/ug11bm/index.php/X-ray_Absorption_and_Fluorescence X-ray_Absorption and Fluorescence] | ||
* Chapter on X-ray absorption in the [http://it.iucr.org/Cb/ch6o3v0001/ International Tables for Crystallography (2006). Vol. C, Chapter 6.3]. | * Chapter on X-ray absorption in the [http://it.iucr.org/Cb/ch6o3v0001/ International Tables for Crystallography (2006). Vol. C, Chapter 6.3]. | ||
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Please contact 11-BM staff if you have questions about sample preparation for highly absorbing materials | Please contact 11-BM staff if you have questions about sample preparation for highly absorbing materials | ||
==Examples== | |||
===Visual Example === | |||
An example illustrating how (severe!) sample x-ray absorption can impact the quality of your 11-BM powder diffraction data is shown below. | An example illustrating how (severe!) sample x-ray absorption can impact the quality of your 11-BM powder diffraction data is shown below. | ||
(click for larger image) | (click for larger image) | ||
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[[Image:absorptionexample.png|200px|absorptionexample.png]] | [[Image:absorptionexample.png|200px|absorptionexample.png]] | ||
===Numeric Examples === | |||
Example absorption calculations using Absorb web utility are shown below. | Example absorption calculations using Absorb web utility are shown below. | ||
Revision as of 17:54, 26 September 2012
Background
Considerations for strongly absorbing samples are discussed below.
11-BM uses transmission (Debye-Scherrer) geometry, therefore sample x-ray absorption (μ) must be considered. Absorption is not normally a problem for most users - the high energy beam (~ 30 keV) is easily able to penetrate these samples. However, absorption can be an issue for materials containing a large fraction of high-Z elements.
A highly absorbing sample will result in a transmission powder pattern with attenuated diffraction peak intensities, especially at low 2 θ angles (the sample is absorbing both the incoming and diffracted x-rays). It may not be possible to analyze these data in any meaningful way.
For samples with moderate absorption, peak intensities are still attenuated, but it is less dependent on scattering angle. Most refinement software packages can correct for this effect (or it can be incorporated in the refined atomic thermal parameters). For samples with low absorption, this effect is negligible and can be ignored.
The total absorption of any sample can be calculated before a measurement. It is a function of the sample composition, packed sample density, capillary radius, and the x-ray wavelength. One first determines the absorption for the composition and x-ray wavelength (μ), then calculates the total absorption (μ*r) for the actual sample to be measured using the capillary radius (r), sample density and packing fraction.
Guidelines for 11-BM Mail-In Samples
For its mail-in program, 11-BM uses a wavelength of ~ 0.41 Å (30 keV), and the standard supplied capillary tubes have a radius of 0.04 cm (~0.8 mm diameter).
Use the convenient Absorb web utilty to estimate sample absorption: http://11bm.xor.aps.anl.gov/absorb/absorb.php
Range of μ*r values
The experimental implications for a range of sample absorption values (μ*r) are given below:
- μ*r < 0.1 : Very negligible absorption
- 0.1 < μ*r < 0.5: Low - no absorption correction needed
- 0.5 < μ*r < 1.0: Normal - correction may be needed for precise thermal parameters
- 1.0 < μ*r < 2.5: High - absorption correction recommended for analysis
- μ*r > 2.5 : Absorption is too large - consider an alternative sample preparation (see below)
Preparation methods to lower absorption
To decrease the μ*r of a highly absorbing sample, one must lower its effective packed density or reduce its radius.
Dilution
One trick is dilute your sample by mixing with a lower density and amorphous material (no extra Bragg peaks!) to lower the overall absorption. Good candidates for this dilution method include silica (SiO2 glass) powder (you can grind it by hand using a mortar and pestle) or amorphous boron.
Nested Capillary
An absorbing powder sample could also be loaded into a smaller diameter capillary, which is then inserted into the standard 11-BM Kapton tube.
Be sure to record the relative amounts of sample and dilution material to determine the average composition of your mixed powder. Once the mixed powder sample is loaded in a capillary, you can determine the actual packed density by measuring the total weight (minus the empty capillary) and volume of the packed sample (packed length * π * r2).
Read our guidelines on nesting capillaries
Coated Capillary
In extreme cases for samples with very high absorption one might consider coating the *inside* of the Kapton capillary with a layer of sample powder mixed with a silicone grease. Or coating the outside of a smaller diameter nested capillary. The sample powder must be *inside* the supplied Kapton tube for mail-in samples.
Using this approach you essentially end up with a hollow tube of sample powder. This gives a good sized sample target with good powder averaging statistics, but without the absorption problems of a solid sample.
NOTE 1: this works for scans at room temperature and below (grease will become viscous at higher temperatures).
NOTE 2: do not use some random grease you find in the lab. Dow Corning #4 silicone grease is good. Other silicone greases may also work. Bad choices include Vaseline and other high vacuum greases. These greases contain an crystalline phase which will add peaks to the sample diffraction pattern. See an example of this plotted here for different greases measured at 11-BM (click for larger image).
If in doubt, check the grease on your lab XRD machine first.
More Information
- Wiki page on X-ray_Absorption and Fluorescence
- Chapter on X-ray absorption in the International Tables for Crystallography (2006). Vol. C, Chapter 6.3.
Please contact 11-BM staff if you have questions about sample preparation for highly absorbing materials
Examples
Visual Example
An example illustrating how (severe!) sample x-ray absorption can impact the quality of your 11-BM powder diffraction data is shown below. (click for larger image)
Numeric Examples
Example absorption calculations using Absorb web utility are shown below.
Example #1
Sample composition: C12H22O11 (Sucrose) Use default Absorb web utility values 0.41 Å, 0.4 mm, 0.6 packing fraction Chemical Formula: C12H22O11 (theoretical density ~ 1.6 g/cm3) Absorb web utility estimates μ = 0.08 cm-1 Total μ*r = 0.01
Comments: absorption is completely negligible, ignore. Note: samples with extremely low absorption may also be weakly scattering. In these cases, a larger diameter capillary may improve the counting statistics. Contact beamline staff if you have questions.
Example #2
Sample composition: Co3O4 Use default Absorb web utility values 0.41 Å, 0.4 mm, 0.6 packing fraction Chemical Formula: Co3O4 (theoretical density ~ 6.11 g/cm3) Absorb web utility estimates μ = 20.95 cm-1 (estimated density ~ 5.7 g/cm3) Total μ*r = 0.84
Comments: absorption is in normal range, μ*r less than 1.0 - no problem for this experiment
Example #3
Sample composition: BaZr0.5Ti0.5O3 Use default Absorb web utility values 0.41 Å, 0.4 mm, 0.6 packing fraction Chemical Formula: BaZr0.5Ti0.5O3 (theoretical density ~ ?? g/cm3) Absorb web utility estimates μ = 47.54 cm-1 (estimated density ~ 8.468 g/cm3) Total μ*r = 1.90
Comments: noticeable absorption, but can be used for analysis with an absorption correction term.
Example #4
Sample composition: PbZrO3 Use default Absorb web utility values 0.41 Å, 0.4 mm, 0.6 packing fraction Chemical Formula: PbZrO3 (theoretical density ~ 9.8 g/cm3) Absorb web utility estimates μ = 158.50 cm-1 (estimated density ~ 11.2 g/cm3) Total μ*r = 6.34
Comments: absorption is too large (μ*r > 5.0), alternative sample preparations are needed (silica dilution etc).
Example #5
Sample composition: Eu11Cd6Sb12 Use default Absorb web utility values 0.41 Å, 0.4 mm, 0.6 packing fraction Chemical Formula: Eu11Cd6Sb12 (theoretical density ~ 9.8 g/cm3) Absorb web utility estimates μ = 191 cm-1 (estimated density ~ 21.8 g/cm3) Total μ*r = 7.64
Comments: extreme absorption!, alternative sample preparations are needed such as dilution + smaller capillaries and/or a hollow coated capillary approach described above.
